hlaCombineAllele: Combine two datasets of HLA types

In zhengxwen/HIBAG: HLA Genotype Imputation with Attribute Bagging

Combine two datasets of HLA types

Description

Combine two objects of hlaAlleleClass.

Usage

hlaCombineAllele(H1, H2)

Arguments

H1	the first hlaAlleleClass object
H2	the second hlaAlleleClass object

Value

Return hlaAlleleClass.

Author(s)

Xiuwen Zheng

See Also

hlaAllele, hlaAlleleSubset

Examples

head(HLA_Type_Table)
dim(HLA_Type_Table)  # 60 13

# make a "hlaAlleleClass" object
hla.id <- "C"
hla <- hlaAllele(HLA_Type_Table$sample.id,
    HLA_Type_Table[, paste(hla.id, ".1", sep="")],
    HLA_Type_Table[, paste(hla.id, ".2", sep="")],
    locus=hla.id, assembly="hg19")
summary(hla)

subhla1 <- hlaAlleleSubset(hla,   1:100)
summary(subhla1)
subhla2 <- hlaAlleleSubset(hla, 201:300)
summary(subhla2)

H <- hlaCombineAllele(subhla1, subhla2)
summary(H)

zhengxwen/HIBAG documentation built on April 16, 2024, 8:41 a.m.