ConvertHomoGene: convert genes symbols between organisms

In zzwch/convgene: This package is designed to conveniently convert gene between human and mouse.

Description

using getLDS function of biomaRt to convert human genes to mouse genes or vice versa. now only symbol is supported, which is used more frequently.

Usage

ConvertHomoGene(genes, orgA = "human", orgB = "mouse", verbose = F)

Arguments

genes	genes to be converted
orgA	from which organism, now human, mouse, macaque are supported
orgB	to which organism, now human, mouse, macaque are supported
verbose	report information

Value

data.frame of genes' mapping

Source

# genes, homology, orthology http://www.informatics.jax.org/downloads/reports/index.html https://gist.github.com/FloWuenne/f8fc922477df04c1642e9d8945c48d47 https://github.com/saeyslab/nichenetr/blob/master/R/supporting_functions.R https://github.com/saeyslab/nichenetr/blob/master/R-raw/developing_package_light.R

zzwch/convgene documentation built on July 11, 2021, 9:41 a.m.