pl_scatterplot: plot x-y scatters

In zzwch/convgene: This package is designed to conveniently convert gene between human and mouse.

Description

plot x-y scatters

Usage

pl_scatterplot(
  meta_data,
  x,
  y,
  group_by = NULL,
  groups = NULL,
  show_points = T,
  shape_by = NULL,
  size_by = NULL,
  show_ellipse = F,
  ellipse_level = 0.5,
  ellipse_alpha = 0.8,
  ellipse_color = "white",
  show_center = F,
  center_method = SummariseExpr,
  center_size = 3,
  center_shape = 1,
  center_alpha = 1,
  colors = scanpy_colors$default_64,
  ...
)

Arguments

meta_data	a data.frame including x, y, group_by
x	colname of meta_data
y	colname of meta_data
group_by	color the points by which vector
groups	subset data to show only those points belonging to groups of group_by
show_points	show geom_point
shape_by	point aes, a value or colname of meta_data
size_by	point aes, a value or colname of meta_data
show_ellipse	show stat_ellipse
ellipse_level	set ellipse area level
ellipse_alpha	ellipse aes, a value of 0 to 1
ellipse_color	ellipse aes, a color
show_center	show mean point
center_method	function used to calc mean center
center_size	center point aes, a value
center_shape	center point aes, a value
center_alpha	center point aes, a value
colors	modify the point colors
...	params passed to center_method

Value

a ggplot object

zzwch/convgene documentation built on July 11, 2021, 9:41 a.m.