SummariseExpr: Do summarise (e.g. mean) for a given vector

In zzwch/convgene: This package is designed to conveniently convert gene between human and mouse.

Description

Do summarise (e.g. mean) for a given vector

Usage

SummariseExpr(
  x,
  method = base::mean,
  by_log = F,
  log_base = base::exp(1),
  exclude_zero = F,
  outlier_cutoff = 1
)

Arguments

x	numeric values in log scale
method	base::mean or any other function returned a value
by_log	calculate by log scale ; If TRUE log_base will be ignored.
log_base	base::exp(1) or 2 or other else, depends on your normalization method.
exclude_zero	exclude zeros when calculate average/median feature value. Note exclude_zero first, outlier_cutoff second.
outlier_cutoff	sometimes outliers (several extremely high cells) should be excluded when do summarise. Set 0.99 to exclude top 1 percent cells. (default: 1)

Value

a numeric value

zzwch/convgene documentation built on July 11, 2021, 9:41 a.m.