tl_PairwiseDEGs: clac DEGs among multiple groups

In zzwch/convgene: This package is designed to conveniently convert gene between human and mouse.

Description

clac DEGs among multiple groups

Usage

tl_PairwiseDEGs(
  data,
  group_by,
  groups = NULL,
  features = NULL,
  p_adjust = T,
  multi_test = kruskal.test,
  do_pairwise = F,
  pairs = NULL,
  pairwise_test = wilcox.test,
  ...
)

Arguments

data	feature by cell matrix
group_by	a vector of cell annotations
groups	subset cells belonging to these groups
features	features to calc
p_adjust	adjust p value
multi_test	function to test across multiple groups
do_pairwise	do pairwised test
pairs	a list of pairs to test, NULL for all pairs
pairwise_test	function to test two groups included in pairs.
...	ohter params passed to pairwise_test.

Value

a data.frame of gene and pvalues

zzwch/convgene documentation built on July 11, 2021, 9:41 a.m.