| abouheif.eg | Phylogenies and quantitative traits from Abouheif |
| acacia | Spatial pattern analysis in plant communities |
| add.scatter | Add graphics to an existing plot |
| ade4-deprecated | Deprecated functions in ade4 |
| ade4-internal | Internal ade4 functions |
| ade4.package | The ade4 package |
| ade4toR | Format Change Utility |
| adegraphicsLoaded | Utility function to test if the package adegraphics is loaded |
| aminoacyl | Codon usage |
| amova | Analysis of molecular variance |
| apis108 | Allelic frequencies in ten honeybees populations at eight... |
| apqe | Apportionment of Quadratic Entropy |
| aravo | Distribution of Alpine plants in Aravo (Valloire, France) |
| ardeche | Fauna Table with double (row and column) partitioning |
| area.plot | Graphical Display of Areas |
| arrival | Arrivals at an intensive care unit |
| as.taxo | Taxonomy |
| atlas | Small Ecological Dataset |
| atya | Genetic variability of Cacadors |
| avijons | Bird species distribution |
| avimedi | Fauna Table for Constrained Ordinations |
| aviurba | Ecological Tables Triplet |
| bacteria | Genomes of 43 Bacteria |
| banque | Table of Factors |
| baran95 | African Estuary Fishes |
| bca.rlq | Between-Class RLQ analysis |
| between | Between-Class Analysis |
| betweencoinertia | Between-class coinertia analysis |
| bf88 | Cubic Ecological Data |
| bicenter.wt | Double Weighted Centring |
| bordeaux | Wine Tasting |
| bsetal97 | Ecological and Biological Traits |
| buech | Buech basin |
| butterfly | Genetics-Ecology-Environment Triple |
| bwca.dpcoa | Between- and within-class double principal coordinate... |
| cailliez | Transformation to make Euclidean a distance matrix |
| capitales | Road Distances |
| carni19 | Phylogeny and quantative trait of carnivora |
| carni70 | Phylogeny and quantitative traits of carnivora |
| carniherbi49 | Taxonomy, phylogenies and quantitative traits of carnivora... |
| casitas | Enzymatic polymorphism in Mus musculus |
| cca | Canonical Correspondence Analysis |
| chatcat | Qualitative Weighted Variables |
| chats | Pair of Variables |
| chazeb | Charolais-Zebus |
| chevaine | Enzymatic polymorphism in Leuciscus cephalus |
| chickenk | Veterinary epidemiological study to assess the risk factors... |
| clementines | Fruit Production |
| cnc2003 | Frequenting movie theaters in France in 2003 |
| coinertia | Coinertia Analysis |
| coleo | Table of Fuzzy Biological Traits |
| combine.4thcorner | Functions to combine and adjust the outputs 3-table methods |
| corkdist | Tests of randomization between distances applied to 'kdist'... |
| corvus | Corvus morphology |
| costatis | STATIS and Co-Inertia : Analysis of a series of paired... |
| costatis.randtest | Monte-Carlo test on a Costatis analysis (in C). |
| deug | Exam marks for some students |
| disc | Rao's dissimilarity coefficient |
| discrimin | Linear Discriminant Analysis (descriptive statistic) |
| discrimin.coa | Discriminant Correspondence Analysis |
| dist.binary | Computation of Distance Matrices for Binary Data |
| dist.dudi | Computation of the Distance Matrix from a Statistical Triplet |
| dist.genet | Genetic distances from gene frequencies |
| dist.ktab | Mixed-variables coefficient of distance |
| dist.neig | Computation of the Distance Matrix associated to a... |
| dist.prop | Computation of Distance Matrices of Percentage Data |
| dist.quant | Computation of Distance Matrices on Quantitative Variables |
| divc | Rao's diversity coefficient also called quadratic entropy |
| divcmax | Maximal value of Rao's diversity coefficient also called... |
| dotchart.phylog | Representation of many quantitative variables in front of a... |
| dotcircle | Representation of n values on a circle |
| doubs | Pair of Ecological Tables |
| dpcoa | Double principal coordinate analysis |
| dudi | Duality Diagram |
| dudi.acm | Multiple Correspondence Analysis |
| dudi.coa | Correspondence Analysis |
| dudi.dec | Decentred Correspondence Analysis |
| dudi.fca | Fuzzy Correspondence Analysis and Fuzzy Principal Components... |
| dudi.hillsmith | Ordination of Tables mixing quantitative variables and... |
| dudi.mix | Ordination of Tables mixing quantitative variables and... |
| dudi.nsc | Non symmetric correspondence analysis |
| dudi.pca | Principal Component Analysis |
| dudi.pco | Principal Coordinates Analysis |
| dunedata | Dune Meadow Data |
| ecg | Electrocardiogram data |
| ecomor | Ecomorphological Convergence |
| EH | Amount of Evolutionary History |
| elec88 | Electoral Data |
| escopage | K-tables of wine-tasting |
| euro123 | Triangular Data |
| fission | Fission pattern and heritable morphological traits |
| foucart | K-tables Correspondence Analysis with the same rows and the... |
| fourthcorner | Functions to compute the fourth-corner statistic |
| friday87 | Faunistic K-tables |
| fruits | Pair of Tables |
| fuzzygenet | Reading a table of genetic data (diploid individuals) |
| gearymoran | Moran's I and Geary'c randomization tests for spatial and... |
| genet | A class of data: tables of populations and alleles |
| ggtortoises | Microsatellites of Galapagos tortoises populations |
| granulo | Granulometric Curves |
| gridrowcol | Complete regular grid analysis |
| hdpg | Genetic Variation In Human Populations |
| housetasks | Contingency Table |
| humDNAm | human mitochondrial DNA restriction data |
| ichtyo | Point sampling of fish community |
| inertia.dudi | Statistics of inertia in a one-table analysis |
| irishdata | Geary's Irish Data |
| is.euclid | Is a Distance Matrix Euclidean ? |
| julliot | Seed dispersal |
| jv73 | K-tables Multi-Regions |
| kcponds | Ponds in a nature reserve |
| kdist | the class of objects 'kdist' (K distance matrices) |
| kdist2ktab | Transformation of K distance matrices (object 'kdist') into K... |
| kdisteuclid | a way to obtain Euclidean distance matrices |
| kplot | Generic Function for Multiple Graphs in a K-tables Analysis |
| kplot.foucart | Multiple Graphs for the Foucart's Correspondence Analysis |
| kplot.mcoa | Multiple Graphs for a Multiple Co-inertia Analysis |
| kplot.mfa | Multiple Graphs for a Multiple Factorial Analysis |
| kplot.pta | Multiple Graphs for a Partial Triadic Analysis |
| kplot.sepan | Multiple Graphs for Separated Analyses in a K-tables |
| kplot.statis | Multiple Graphs of a STATIS Analysis |
| krandtest | Class of the Permutation Tests (in C). |
| ktab | the class of objects 'ktab' (K-tables) |
| ktab.data.frame | Creation of K-tables from a data frame |
| ktab.list.df | Creating a K-tables from a list of data frames. |
| ktab.list.dudi | Creation of a K-tables from a list of duality diagrams |
| ktab.match2ktabs | STATIS and Co-Inertia : Analysis of a series of paired... |
| ktab.within | Process to go from a Within Analysis to a K-tables |
| lascaux | Genetic/Environment and types of variables |
| lingoes | Transformation of a Distance Matrix for becoming Euclidean |
| lizards | Phylogeny and quantitative traits of lizards |
| macaca | Landmarks |
| macon | Wine Tasting |
| macroloire | Assemblages of Macroinvertebrates in the Loire River (France) |
| mafragh | Phyto-Ecological Survey |
| mantel.randtest | Mantel test (correlation between two distance matrices (in... |
| mantel.rtest | Mantel test (correlation between two distance matrices (in... |
| maples | Phylogeny and quantitative traits of flowers |
| mariages | Correspondence Analysis Table |
| mbpcaiv | Multiblock principal component analysis with instrumental... |
| mbpls | Multiblock partial least squares |
| mcoa | Multiple CO-inertia Analysis |
| mdpcoa | Multiple Double Principal Coordinate Analysis |
| meau | Ecological Data : sites-variables, sites-species, where and... |
| meaudret | Ecological Data : sites-variables, sites-species, where and... |
| mfa | Multiple Factorial Analysis |
| microsatt | Genetic Relationships between cattle breeds with... |
| mjrochet | Phylogeny and quantitative traits of teleos fishes |
| mld | Multi Level Decomposition of unidimensional data |
| mollusc | Faunistic Communities and Sampling Experiment |
| monde84 | Global State of the World in 1984 |
| morphosport | Athletes' Morphology |
| mstree | Minimal Spanning Tree |
| multiblock | Display and summarize multiblock objects |
| multispati | Multivariate spatial analysis |
| multispati.randtest | Multivariate spatial autocorrelation test (in C) |
| multispati.rtest | Multivariate spatial autocorrelation test |
| neig | Neighbourhood Graphs |
| newick2phylog | Create phylogeny |
| newick.eg | Phylogenetic trees in Newick format |
| niche | Method to Analyse a pair of tables : Environmental and... |
| nipals | Non-linear Iterative Partial Least Squares (NIPALS) algorithm |
| njplot | Phylogeny and trait of bacteria |
| olympic | Olympic Decathlon |
| optimEH | Nee and May's optimizing process |
| oribatid | Oribatid mite |
| originality | Originality of a species |
| orisaved | Maximal or minimal amount of originality saved under optimal... |
| orthobasis | Orthonormal basis for orthonormal transform |
| orthogram | Orthonormal decomposition of variance |
| ours | A table of Qualitative Variables |
| palm | Phylogenetic and quantitative traits of amazonian palm trees |
| pap | Taxonomy and quantitative traits of carnivora |
| pcaiv | Principal component analysis with respect to instrumental... |
| pcaivortho | Principal Component Analysis with respect to orthogonal... |
| pcoscaled | Simplified Analysis in Principal Coordinates |
| pcw | Distribution of of tropical trees along the Panama canal |
| perthi02 | Contingency Table with a partition in Molecular Biology |
| phylog | Phylogeny |
| PI2newick | Import data files from Phylogenetic Independance Package |
| piosphere | Plant traits response to grazing |
| plot.between | Between-Class Analysis |
| plot.phylog | Plot phylogenies |
| plot.within | Within-Class Analysis |
| presid2002 | Results of the French presidential elections of 2002 |
| procella | Phylogeny and quantitative traits of birds |
| procuste | Simple Procruste Rotation between two sets of points |
| procuste.randtest | Monte-Carlo Test on the sum of the singular values of a... |
| procuste.rtest | Monte-Carlo Test on the sum of the singular values of a... |
| pta | Partial Triadic Analysis of a K-tables |
| quasieuclid | Transformation of a distance matrice to a Euclidean one |
| randboot | Bootstrap simulations |
| randboot.multiblock | Bootstraped simulations for multiblock methods |
| randEH | Nee and May's random process |
| randtest | Class of the Permutation Tests (in C). |
| randtest.amova | Permutation tests on an analysis of molecular variance (in... |
| randtest.between | Monte-Carlo Test on the between-groups inertia percentage (in... |
| randtest.coinertia | Monte-Carlo test on a Co-inertia analysis (in C). |
| randtest.discrimin | Monte-Carlo Test on a Discriminant Analysis (in C). |
| randtest.pcaiv | Monte-Carlo Test on the percentage of explained (i.e.... |
| randxval | Two-fold cross-validation |
| rankrock | Ordination Table |
| reconst | Reconstitution of Data from a Duality Diagram |
| rhizobium | Genetic structure of two nitrogen fixing bacteria influenced... |
| rhone | Physico-Chemistry Data |
| rlq | RLQ analysis |
| rpjdl | Avifauna and Vegetation |
| rtest | Class of the Permutation Tests (in R). |
| rtest.between | Monte-Carlo Test on the between-groups inertia percentage (in... |
| rtest.discrimin | Monte-Carlo Test on a Discriminant Analysis (in R). |
| RVdist.randtest | Tests of randomization on the correlation between two... |
| RV.rtest | Monte-Carlo Test on the sum of eigenvalues of a co-inertia... |
| santacatalina | Indirect Ordination |
| sarcelles | Array of Recapture of Rings |
| s.arrow | Plot of the factorial maps for the projection of a vector... |
| scalewt | Compute or scale data using (weighted) means, variances and... |
| scatter | Graphical representation of the outputs of a multivariate... |
| scatter.acm | Plot of the factorial maps in a Multiple Correspondence... |
| scatter.coa | Plot of the factorial maps for a correspondence analysis |
| scatter.dudi | Plot of the Factorial Maps |
| scatter.fca | Plot of the factorial maps for a fuzzy correspondence... |
| scatterutil | Graphical utility functions |
| s.chull | Plot of the factorial maps with polygons of contour by level... |
| s.class | Plot of factorial maps with representation of point classes |
| sco.boxplot | Representation of the link between a variable and a set of... |
| sco.class | 1D plot of a numeric score and a factor with labels |
| sco.distri | Representation by mean- standard deviation of a set of weight... |
| sco.gauss | Relationships between one score and qualitative variables |
| sco.label | 1D plot of a numeric score with labels |
| sco.match | 1D plot of a pair of numeric scores with labels |
| sco.quant | Graph to Analyse the Relation between a Score and... |
| s.corcircle | Plot of the factorial maps of a correlation circle |
| score | Graphs for One Dimension |
| score.acm | Graphs to study one factor in a Multiple Correspondence... |
| score.coa | Reciprocal scaling after a correspondence analysis |
| score.mix | Graphs to Analyse a factor in a Mixed Analysis |
| score.pca | Graphs to Analyse a factor in PCA |
| s.distri | Plot of a frequency distribution |
| seconde | Students and Subjects |
| sepan | Separated Analyses in a K-tables |
| s.hist | Display of a scatterplot and its two marginal histograms |
| s.image | Graph of a variable using image and contour |
| s.kde2d | Scatter Plot with Kernel Density Estimate |
| skulls | Morphometric Evolution |
| s.label | Scatter Plot |
| s.logo | Representation of an object in a graph by a picture |
| s.match | Plot of Paired Coordinates |
| s.match.class | Scatterplot of two sets of coordinates and a partionning into... |
| s.multinom | Graph of frequency profiles (useful for instance in genetic) |
| statico | STATIS and Co-Inertia : Analysis of a series of paired... |
| statico.krandtest | Monte-Carlo test on a Statico analysis (in C). |
| statis | STATIS, a method for analysing K-tables |
| steppe | Transect in the Vegetation |
| s.traject | Trajectory Plot |
| supcol | Projections of Supplementary Columns |
| suprow | Projections of Supplementary Rows |
| s.value | Representation of a value in a graph |
| symbols.phylog | Representation of a quantitative variable in front of a... |
| syndicats | Two Questions asked on a Sample of 1000 Respondents |
| t3012 | Average temperatures of 30 French cities |
| table.cont | Plot of Contingency Tables |
| table.dist | Graph Display for Distance Matrices |
| table.paint | Plot of the arrays by grey levels |
| table.phylog | Plot arrays in front of a phylogenetic tree |
| table.value | Plot of the Arrays |
| tarentaise | Mountain Avifauna |
| taxo.eg | Examples of taxonomy |
| testdim | Function to perform a test of dimensionality |
| testdim.multiblock | Selection of the number of dimension by two-fold... |
| tintoodiel | Tinto and Odiel estuary geochemistry |
| tithonia | Phylogeny and quantitative traits of flowers |
| tortues | Morphological Study of the Painted Turtle |
| toxicity | Homogeneous Table |
| triangle.class | Triangular Representation and Groups of points |
| triangle.plot | Triangular Plotting |
| trichometeo | Pair of Ecological Data |
| ungulates | Phylogeny and quantitative traits of ungulates. |
| uniquewt.df | Elimination of Duplicated Rows in a Array |
| variance.phylog | The phylogenetic ANOVA |
| vegtf | Vegetation in Trois-Fontaines |
| veuvage | Example for Centring in PCA |
| wca.rlq | Within-Class RLQ analysis |
| westafrica | Freshwater fish zoogeography in west Africa |
| within | Within-Class Analysis |
| withincoinertia | Within-class coinertia analysis |
| withinpca | Normed within principal component analysis |
| witwit.coa | Internal Correspondence Analysis |
| woangers | Plant assemblages in woodlands of the conurbation of Angers... |
| worksurv | French Worker Survey (1970) |
| yanomama | Distance Matrices |
| zealand | Road distances in New-Zealand |
