collapse.to.singles: Collapse zero-length branches
In phyext: An extension of some of the classes in phylobase. Tree objects now support subnodes on branches
Description
Usage
Arguments
Details
Value
Author(s)
Description
This function is not being used at this point, but works. Sister function of expand.singles -> converts internal nodes with zero-length branches into singletons (in phylo4 format). Will only work if the zero-len branch is connected to a tip.
Usage
1
collapse.to.singles(tree, by.name = NULL)
Arguments
tree
Phylo4 object
by.name
If this is set then tip labels are searched for this pattern and those nodes are collapsed. (see tipLabels function in phylobase).
Details
Not currently being used.
Value
A new phylogenetic tree which contains singleton nodes (possibly)
Author(s)
J. Conrad Stack
phyext documentation built on May 2, 2019, 5:19 p.m.
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Description Usage Arguments Details Value Author(s)
Description
This function is not being used at this point, but works. Sister function of expand.singles -> converts internal nodes with zero-length branches into singletons (in phylo4 format). Will only work if the zero-len branch is connected to a tip.
Usage
1 | collapse.to.singles(tree, by.name = NULL)
|
Arguments
tree |
Phylo4 object |
by.name |
If this is set then tip labels are searched for this pattern and those nodes are collapsed. (see |
Details
Not currently being used.
Value
A new phylogenetic tree which contains singleton nodes (possibly)
Author(s)
J. Conrad Stack
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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