Write phylo4d_ext object or list to a nexus file
This function is similar to
write.nexus from the ape package. If the there are subnodes in the object then these are written as SIMMAP-formatted (v1.0) strings.
A phylo4d_ext object or list of these objects
The file to output to
Should taxa names be translated (not written in every newick string) or not.
Other arguments which are passed to
This function will eventually support more subnode output formats other than just SIMMAP v1.0. Work is in progress on this. But for now, that is the only format that the brownie core reads and this function was written mainly to generate brownie files.
It borrows a lot of it's code and structure from the ape function
J. Conrad Stack