get.tree.weights: Get tree weights

In phyext: An extension of some of the classes in phylobase. Tree objects now support subnodes on branches

Description

Read the tree weights from a nexus file or text. It looks within the comments before each tree string for the weights.

Usage

get.tree.weights(finput, 
	text = NULL, 
	starters = c("&W", "&lnP"), 
	splitchar = "( |=)")

Arguments

finput	A file to be read in
text	Alternatively, send it text itself.
starters	The character pattern which indicates the start of the weight (within a comment)
splitchar	The character pattern which separates the 'starters' from the weights themselves

Value

Returns a numeric vector of the weights (if any are avialable).

Author(s)

J. Conrad Stack

phyext documentation built on May 2, 2019, 5:19 p.m.