Description Usage Arguments Details Value Author(s) See Also
This function reads raw text in from the nexus file finput. It then writes the TAXA and blockname
blocks to a temporary nexus file using CHARACTERS instead of blockname
. It then re-reads the temporary nexus file using readNexus(tmpfile,type="data")
.
1 | read.characters2(finput, blockname = "characters2")
|
finput |
|
blockname |
This function was created mainly to handle reading CHARACTERS2 nexus blocks. These blocks are used by brownie along with CHARACTERS to separate discrete (factor) data from continuous (numeric) data. It is also used because SIMMAP-formatted (version < 1.5) nexus files tend to cause problems with the nexus class library (which phylobase uses)
A data.frame containing the data from blockname
.
J. Conrad Stack
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