read.simmap: Read simmap-formatted newick strings (version 1.0)

In phyext: An extension of some of the classes in phylobase. Tree objects now support subnodes on branches

Description

This function takes in a text string which contains a simmap-formatted newick string. '' and '' are used in these strings to indicate subnodes and character states.

Usage

read.simmap(file = "", text = NULL, vers = 1.1, as.num = FALSE, ...)

Arguments

file	This is not being used
text	The simmap newick string
vers	Which SIMMAP format to use. vers=1.0 uses ';' to split up tokens within a simmap block. vers=1.1 uses ':'. See examples
as.num	Not currently used.
...	Not currently used.

Value

A phylo4d_ext object

Author(s)

J. Conrad Stack

phyext documentation built on May 2, 2019, 5:19 p.m.