Description Usage Arguments Details Value Author(s)
This function reads the trees from a nexus file where the trees are SIMMAP-formatted (v1.0). It does not read any data blocks, just the trees. If the file contains multiple trees, this function returns them as a list.
1 | read.nexus.simmap(finput = "", text = NULL, vers = NULL, ...)
|
finput |
A nexus file |
text |
Alternatively, read this text. |
vers |
Which version of simmap to try to read. |
... |
All other arguments are passed to internal |
This function reads nexus blocks using a combination of internal functions and a few phylobase functions. If simmap newick trees are found then the function read.simmap
is used otherwise a modified read.tree
is found.
A list containing either phylo4d objects or phylo4d_ext objects depending on whether or not SIMMAP characters are found.
J. Conrad Stack
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