Description Usage Arguments Details
This function takes in a text string which contains a simmap-formatted newick string. '[' and ']' are used in these strings to indicate subnodes and character states.
1 | read.simmap.new(file = "", text = NULL, specialpatt = character(0))
|
file |
A file containing a newick string with SIMMAP 1.5 style comments |
text |
The simmap newick string |
specialpatt |
A pattern to match against variable names. NOTE: For now, it should almost always be set to '.*' and needs to be further tested before anything else should be tried. |
This is still a work in progress.
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