read.simmap.new: Read simmap-formatted newick strings (version 1.5)

Description Usage Arguments Details

Description

This function takes in a text string which contains a simmap-formatted newick string. '[' and ']' are used in these strings to indicate subnodes and character states.

Usage

1
read.simmap.new(file = "", text = NULL, specialpatt = character(0))

Arguments

file

A file containing a newick string with SIMMAP 1.5 style comments

text

The simmap newick string

specialpatt

A pattern to match against variable names. NOTE: For now, it should almost always be set to '.*' and needs to be further tested before anything else should be tried.

Details

This is still a work in progress.


phyext documentation built on May 2, 2019, 5:19 p.m.