write.simmap: Write phylo4d_ext tree to newick string

In phyext: An extension of some of the classes in phylobase. Tree objects now support subnodes on branches

Description

This function write a phylo4d_ext object to a SIMMAP-formatted (version 1.0 or 1.1) text string. This function is mainly used in conjunction with write.nexus.simmap. It is an extension of the write.tree function in the ape package.

Usage

write.simmap(x, usestate = NULL, file = "", vers = 1.1, ...)

Arguments

x	A phylo4d_ext object
usestate	Which data column should be written in the internal simmap blocks. If NULL, then either the first data column (vers==1.1 || vers==1.0) or all data columns (vers==1.5) are used.
file	The file to write to. If not set, then the tree is printed to the screen
vers	Which version to use. 1.0 uses the ';' as the internal delimiter which 1.1 uses ':'
...	These are passed to write.tree (which is only called if there are no subnodes)

Value

A character string (if file is not set)

Author(s)

J. Conrad Stack

See Also

newlabels.v15, newlabels.v1x, write.nexus.simmap

phyext documentation built on May 2, 2019, 5:19 p.m.