SSplotTags: Plot tagging data and fits
In r4ss: R code for Stock Synthesis

Description Usage Arguments Author(s) See Also

Plot observed and expected tag recaptures in aggregate and by tag group.

SSplotTags(replist = replist, subplots = 1:8, latency = 0, rows = 1,
cols = 1, tagrows = 3, tagcols = 3, plot = TRUE, print = FALSE,
pntscalar = 2.6, minnbubble = 8, pwidth = 7, pheight = 7, punits = "in",
ptsize = 12, res = 300, cex.main = 1, col1 = "blue", col2 = "red",
col3 = "grey95", col4 = "grey70", 
labels = c("Year", "Frequency", "Tag Group",
           "Fit to tag recaptures by tag group",
           "Tag recaptures aggregated across tag groups",
           "Observed tag recaptures by year and tag group",
           "Residuals for tag recaptures: (obs-exp)/sqrt(exp)",
           "Observed and expected tag recaptures by year and tag group"),
plotdir = "default", verbose = TRUE)

`replist`	list created by `SS_output`
`subplots`	vector controlling which subplots to create
`latency`	period of tag mixing to exclude from plots (in future could be included in SS output)
`rows`	number or rows of panels for regular plots
`cols`	number or columns of panels for regular plots
`tagrows`	number or rows of panels for multi-panel plots
`tagcols`	number or columns of panels for multi-panel plots
`plot`	plot to active plot device?
`print`	print to PNG files?
`pntscalar`	maximum bubble size for balloon plots; each plot scaled independently based on this maximum size and the values plotted. Often some plots look better with one value and others with a larger or smaller value. Default=2.6
`minnbubble`	minimum number of years below which blank years will be added to bubble plots to avoid cropping
`pwidth`	default width of plots printed to files in units of `punits`. Default=7.
`pheight`	default height width of plots printed to files in units of `punits`. Default=7.
`punits`	units for `pwidth` and `pheight`. Can be "px" (pixels), "in" (inches), "cm" or "mm". Default="in".
`ptsize`	point size for plotted text in plots printed to files (see help("png") in R for details). Default=12.
`res`	resolution of plots printed to files. Default=300
`cex.main`	character expansion parameter for plot titles
`col1`	color for bubbles
`col2`	color for lines with expected values
`col3`	shading color for observations within latency period
`col4`	shading color for observations after latency period
`labels`	vector of labels for plots (titles and axis labels)
`plotdir`	directory where PNG files will be written. by default it will be the directory where the model was run.
`verbose`	return updates of function progress to the R GUI?