lhs.plot.isoear: Plot the isopleth edge:area ratio as a function of k/a/r

Description Usage Arguments

Description

Creates a plot of the ratio of edge to area for isopleths

Usage

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lhs.plot.isoear(lhs, id = NULL, k = NULL, r = NULL, a = NULL,
  s = NULL, hs.names = NULL, sort.metric = NULL, iso.idx = NULL,
  figs.per.page = 1, legend = TRUE, title = NULL,
  title.show = TRUE, subtitle = TRUE, mar = c(3.3, 3.2, if
  (title.show) (if (subtitle) 3.2 else 2.3) else 0.5, 0.5), mgp = c(2,
  0.7, 0), png.fn = NULL, png.dir = NULL, png.dir.make = TRUE,
  png.width = 800, png.height = png.width, png.pointsize = 12 +
  (png.width - 480)/80, png.fn.pre = NULL, png.fn.suf = NULL,
  png.overwrite = TRUE, panel.num = NULL,
  panel.num.inside.plot = !title.show, bg = "white",
  legend.space = if (legend) 0.05 else 0, ...)

Arguments

lhs

A LoCoH-hullset object

id

The id(s) of the individual(s) to include in the plot

k

A k-value for the number of nearest neighbors around each point to include in the plot

r

A r-value for the number of nearest neighbors around each point to include in the plot

a

A a-value for the number of nearest neighbors around each point to include in the plot

s

The s value(s) of nearest neighbor sets to include in the plot. If NULL, all values will be used

hs.names

The name(s) of saved hullsets to analyze

sort.metric

The name(s) of isopleth sort metrics to include in the plot

iso.idx

The indices of isopleths to include in the plot

figs.per.page

Number of plots per page

legend

Whether to include a legend. T/F.

title

The title to be displayed. Character. If NULL a title will be constructed.

title.show

Whether to show the title. T/F.

subtitle

Whether to add a subtitle to the automatically constructed title (when title=NULL, otherwise ignored)

mar

The plot margins. A four item numeric vector

mgp

The distance away from the edge of the plot for the 1) label, 2) tick marks, and 3) axis line. A three-item numeric vector

png.fn

A filename for a PNG file

png.dir

The directory for a PNG file (filename will be constructed automatically). Ignored if png.fn is passed

png.dir.make

Whether to create png.dir if it doesn't exist. T/F

png.width

The width of the PNG image

png.height

The height of the PNG image

png.pointsize

The pointsize (in pixels) for the PNG image, equivalent to the height or width of a character in pixels (increase to make labels appear larger)

png.fn.pre

A prefix that will be used in the construction of the PNG filename. Ignored if png.fn is passed.

png.fn.suf

A suffix that will be used in the construction of the PNG filename. Ignored if png.fn is passed.

png.overwrite

Whether to overwrite an existing PNG file if it exists. T/F.

panel.num

A number or letter to display in the upper left hand corner of the plot when the plot will be used as part of a multi-frame graphic (as in publications). Character

panel.num.inside.plot

Whether to display panel.num inside the plot area itself, as opposed to the title area. Ignored if panel.num is NULL. T/F

bg

Background color

legend.space

The amount of additional space on the lower end of the x-axis to make room for the legend. Expressed as a proportion of the range of the x-axis values

...

Additional parameters that will be passed to the plot function


tlocoh documentation built on May 2, 2019, 5:27 p.m.