API for ABSSeq
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
| Global functions | |
|---|---|
| ABSDataSet | Man page Source code |
| ABSDataSet-class | Man page |
| ABSSeq | Man page Source code |
| ABSSeqlm | Man page Source code |
| LevelstoNormFC | Man page |
| LevelstoNormFC,ABSDataSet-method | Man page |
| LevelstoNormFC.ABSDataSet | Source code |
| LevelstoNormFC<- | Man page |
| LevelstoNormFC<-,ABSDataSet,numeric-method | Man page |
| ReplaceOutliersByMAD | Man page Source code |
| SumInfo-class | Man page |
| [[<-,SumInfo,character,missing-method | Man page |
| aFoldcomplexDesign | Man page Source code |
| callDEs | Man page Source code |
| callParameter | Man page Source code |
| callParameterwithoutReplicates | Man page Source code |
| callPergroup | Source code |
| counts | Man page |
| counts,ABSDataSet-method | Man page |
| counts.ABSDataSet | Source code |
| counts<- | Man page |
| counts<-,ABSDataSet,matrix-method | Man page |
| estimateSizeFactorsForMatrix | Man page Source code |
| excounts | Man page |
| excounts,ABSDataSet-method | Man page |
| excounts.ABSDataSet | Source code |
| excounts<- | Man page |
| excounts<-,ABSDataSet,matrix-method | Man page |
| genAFold | Man page Source code |
| groups | Man page |
| groups,ABSDataSet-method | Man page |
| groups.ABSDataSet | Source code |
| groups<- | Man page |
| groups<-,ABSDataSet,factor-method | Man page |
| maxRates | Man page |
| maxRates,ABSDataSet-method | Man page |
| maxRates.ABSDataSet | Source code |
| maxRates<- | Man page |
| maxRates<-,ABSDataSet,numeric-method | Man page |
| minRates | Man page |
| minRates,ABSDataSet-method | Man page |
| minRates.ABSDataSet | Source code |
| minRates<- | Man page |
| minRates<-,ABSDataSet,numeric-method | Man page |
| minimalDispersion | Man page |
| minimalDispersion,ABSDataSet-method | Man page |
| minimalDispersion.ABSDataSet | Source code |
| minimalDispersion<- | Man page |
| minimalDispersion<-,ABSDataSet,numeric-method | Man page |
| normMethod | Man page |
| normMethod,ABSDataSet-method | Man page |
| normMethod.ABSDataSet | Source code |
| normMethod<- | Man page |
| normMethod<-,ABSDataSet,character-method | Man page |
| normalFactors | Man page Source code |
| paired | Man page |
| paired,ABSDataSet-method | Man page |
| paired.ABSDataSet | Source code |
| paired<- | Man page |
| paired<-,ABSDataSet,logical-method | Man page |
| plotDifftoBase | Man page Source code |
| preAFold | Source code |
| preAFoldComplex | Source code |
| qtotalNormalized | Man page Source code |
| replaceByrow | Source code |
| results | Man page |
| results,ABSDataSet-method | Man page |
| results.ABSDataSet | Source code |
| sFactors | Man page |
| sFactors,ABSDataSet-method | Man page |
| sFactors<- | Man page |
| sFactors<-,ABSDataSet,numeric-method | Man page |
| simuN5 | Man page |
| sizeFactors.ABSDataSet | Source code |
