normMethod: Accessors for the 'normMethod' slot of a ABSDataSet object.

Description Usage Arguments Details Examples

Description

Accessor functions for the 'normMethod' information in a ABSDataSet object.

Usage

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## S4 method for signature 'ABSDataSet'
normMethod(object)

## S4 replacement method for signature 'ABSDataSet,character'
normMethod(object)<-value

Arguments

object

an ABSDataSet object.

value

a character object, should be one of 'user', 'qtoatl', 'total', 'quartile' and 'geometric'. See normalFactors

Details

The 'normMethod' is the method for calculating the size factors. Currently, Four methods: 'user', 'qtoatl', 'total', 'quartile' and 'DESeq' are available.

Examples

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ABSSeq documentation built on Nov. 8, 2020, 5:07 p.m.