paired: Accessors for the 'paired' slot of a ABSDataSet object.

In ABSSeq: ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Description

Accessors for the 'paired' slot of a ABSDataSet object, return a logical value

Usage

## S4 method for signature 'ABSDataSet'
paired(object)

## S4 replacement method for signature 'ABSDataSet,logical'
paired(object)<-value

Arguments

object	a ABSDataSet object.
value	value a boolean object, should be either TRUE or FALSE.

Details

The 'paired' is the switch for differential expression detection among paired samples, with a boolean value: TRUE or FALSE (default). When "paired" is TRUE, the replicates in each group should be equal.

Examples

data(simuN5)
obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
paired(obj)
paired(obj) <- TRUE
paired(obj)

ABSSeq documentation built on Nov. 8, 2020, 5:07 p.m.