excounts: Accessors for the 'excounts' slot of a ABSDataSet object.

In ABSSeq: ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Description

Accessors for the 'excounts' slot of a ABSDataSet object, return a matrix

Usage

## S4 replacement method for signature 'ABSDataSet,matrix'
excounts(object)<-value

Arguments

object	a ABSDataSet object.
value	an numeric matrix

Details

The excounts slot holds the nomarlized (trimmed or not) count data as a matrix of non-negative integer count values, rows and columns for genes and samples, respectively.

See Also

ABSDataSet, ReplaceOutliersByMAD

Examples

data(simuN5)
obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
obj <- normalFactors(obj)
obj <- ReplaceOutliersByMAD(obj)
head(excounts(obj))

ABSSeq documentation built on Nov. 8, 2020, 5:07 p.m.