normalFactors: Estimating size factors from the reads count table

Description Usage Arguments Details Value Examples

View source: R/functions.R

Description

Function for esitmating size factors

Usage

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normalFactors(object)

Arguments

object

a ABSSeq object with element of 'counts' and 'normMethod', see the constructor functions ABSDataSet.

Details

Given a matrix of count data, this function esitmates the size factors by selected method. It aslo provides four different methods for normalizing according to user-defined size factors, total reads, up quantile (75

Value

a ABSDataSet object with the estimates size factors, one element per column. Use the sFactors to show it.

Examples

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ABSSeq documentation built on Nov. 8, 2020, 5:07 p.m.