Man pages for ABSSeq
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

ABSDataSetABSDataSet object and constructors
ABSSeqDifferential expression analysis based on the total counts...
ABSSeqlmDifferential expression analysis for complex desgin.
aFoldcomplexDesignCalculate parameters for differential expression test base on...
callDEsTesting the differential expression by counts difference
callParameterCalculate parameters for differential expression test base on...
callParameterwithoutReplicatesCalculate parameters for differential expression test base on...
countsAccessors for the 'counts' slot of a ABSDataSet object.
estimateSizeFactorsForMatrixLow-level function to estimate size factors with robust...
excountsAccessors for the 'excounts' slot of a ABSDataSet object.
genAFoldCalculate parameters for differential expression test base on...
groupsAccessors for the 'groups' slot of a ABSDataSet object.
LevelstoNormFCAccessors for the 'LevelstoNormFC' slot of a ABSDataSet...
maxRatesAccessors for the 'maxRates' slot of a ABSDataSet object.
minimalDispersionAccessors for the 'minDispersion' slot of a ABSDataSet...
minRatesAccessors for the 'minRates' slot of a ABSDataSet object.
normalFactorsEstimating size factors from the reads count table
normMethodAccessors for the 'normMethod' slot of a ABSDataSet object.
pairedAccessors for the 'paired' slot of a ABSDataSet object.
plotDifftoBasePlot absolute log2 fold-change against base mean of...
qtotalNormalizedEstimating size factors from the reads count table via...
ReplaceOutliersByMADReplacing outliers by moderated MAD
resultsAccessor functions for the result from a ABSDataSet
sFactorsAccessors for the 'sizeFactor' slot of a ABSDataSet object.
simuN5Simulated study with random outliers
ABSSeq documentation built on April 29, 2020, 4:47 a.m.