Files in ASpli

Analysis of Alternative Splicing Using RNA-Seq

R/getConditions_function.R R/ASpli_show_methods.R R/bins_DEXSeq.R R/example_data.R R/splicingReport_functions.R R/mergeBinDUAS_functions.R R/binGenome_functions.R R/readCounts_functions.R R/filter_functions.R R/jDUreport_functions.R R/loadBam_function.R R/ASDiscover_functions.R R/subset_methods.R R/plotBins_functions.R R/filterCounts.R R/ASpli_methods.R R/common_functions.R R/DUreport_functions.R R/plotGenomeRegions_functions.R vignettes/create_plotbin_example1_data.R vignettes/create_plotbin_example2_data.R vignettes/images/binDefinition.pdf vignettes/images/psi_pir_junc.pdf vignettes/images/clusters_ok.pdf vignettes/images/psi_pir_junc_ok.pdf vignettes/images/ZNF410_E013_gr.pdf vignettes/images/psi3ss.pdf vignettes/images/workflow.pdf vignettes/images/workflow_ok.pdf vignettes/images/psi5ss.pdf vignettes/images/psi_pir2.pdf vignettes/images/GENE02_E002_gr.pdf vignettes/images/psi_junc.pdf vignettes/images/pir_junc.pdf vignettes/images/GENE10_E002_gr.pdf vignettes/images/GENE02_E002b_pr.pdf vignettes/images/psies.pdf vignettes/images/fig1.pdf vignettes/images/pir.pdf vignettes/images/GENE02_E002_pr.pdf vignettes/images/event_assignment.pdf man/show-methods.Rd man/ASpliSplicingReport-class.Rd man/subset-methods.Rd man/acc_features.Rd man/junctionDUreport.Rd man/DUreportBinSplice-method.Rd man/ASpliCounts.Rd man/acc_AS.Rd man/splicingReport.Rd man/acc_is.Rd man/getConditions-function.Rd man/loadBAM.Rd man/ASpliIntegratedSignals-class.Rd man/jDUreport.Rd man/binGenome-methods.Rd man/binGenome.Rd man/ASpli-deprecated.Rd man/filterSignals.Rd man/plotBins.Rd man/gbDUreport-method.Rd man/mergeBinDUAS-method.Rd man/DUreport.Rd man/acc_DU.Rd man/exportIntegratedSignals.Rd man/plotGenomicRegions.Rd man/acc_JDU.Rd man/DUreport.norm.Rd man/write-methods.Rd man/acc_counts.Rd man/ASpliAS-class.Rd man/rds.Rd man/ASpliFeatures-class.Rd man/filterDU-method.Rd man/example_data.Rd man/gbCounts.Rd man/ASpli-package.Rd man/ASpliDU-class.Rd man/jCounts-methods.Rd man/containsJunctions-function.Rd man/DUreport.offset.Rd man/integrateSignals.Rd man/write.Rd man/exportSplicingReports.Rd man/ASpliCounts-class.Rd man/acc_MergedReport.Rd man/ASpliJDU-class.Rd inst/doc/ASpli.pdf inst/doc/ASpli.R