API for CATALYST
Cytometry dATa anALYSis Tools
| Global functions | |
|---|---|
| .anno_clusters | Source code |
| .anno_factors | Source code |
| .check_args_applyCutoffs | Source code |
| .check_args_assignPrelim | Source code |
| .check_args_clrDR | Source code |
| .check_args_compCytof | Source code |
| .check_args_estCutoffs | Source code |
| .check_args_normCytof | Source code |
| .check_args_pbMDS | Source code |
| .check_args_plotDiffHeatmap | Source code |
| .check_args_plotExprHeatmap | Source code |
| .check_args_plotFreqHeatmap | Source code |
| .check_args_plotScatter | Source code |
| .check_args_sce2fcs | Source code |
| .check_assay | Source code |
| .check_cd_factor | Source code |
| .check_k | Source code |
| .check_pal | Source code |
| .check_sce | Source code |
| .check_sm | Source code |
| .check_which | Source code |
| .get_bead_cols | Source code |
| .get_bead_inds | Source code |
| .get_deltas | Source code |
| .get_features | Source code |
| .get_ids | Source code |
| .get_mets_from_chs | Source code |
| .get_ms_from_chs | Source code |
| .get_shapes | Source code |
| .get_sij | Source code |
| .get_spill_chs | Source code |
| .make_symetric | Source code |
| .nrs | Source code |
| .plot_bead_scatter | Source code |
| .plot_smooth_beads | Source code |
| .read_fs | Source code |
| .scale_exprs | Source code |
| .transform | Source code |
| .warn_new_intearctions | Source code |
| PBMC_fs | Man page |
| PBMC_md | Man page |
| PBMC_panel | Man page |
| SCE-accessors | Man page |
| adaptSpillmat | Man page Source code |
| applyCutoffs | Man page Source code |
| assignPrelim | Man page Source code |
| channels | Man page |
| channels,SingleCellExperiment-method | Man page |
| clrDR | Man page Source code |
| cluster | Man page Source code |
| cluster_codes | Man page |
| cluster_codes,SingleCellExperiment-method | Man page |
| cluster_ids | Man page |
| cluster_ids,SingleCellExperiment,character-method | Man page |
| cluster_ids,SingleCellExperiment,missing-method | Man page |
| compCytof | Man page Source code |
| computeSpillmat | Man page Source code |
| data | Man page |
| delta_area | Man page |
| delta_area,SingleCellExperiment-method | Man page |
| ei | Man page |
| ei,SingleCellExperiment-method | Man page |
| estCutoffs | Man page Source code |
| extractClusters | Man page Source code |
| filterSCE | Man page Source code |
| guessPanel | Man page Source code |
| isotope_list | Man page |
| marker_classes | Man page |
| marker_classes,SingleCellExperiment-method | Man page |
| mergeClusters | Man page Source code |
| merging_table | Man page |
| mp_cells | Man page |
| n_cells | Man page |
| n_cells,SingleCellExperiment-method | Man page |
| normCytof | Man page Source code |
| pbMDS | Man page Source code |
| plotAbundances | Man page Source code |
| plotClusterExprs | Man page Source code |
| plotClusterHeatmap | Man page Source code |
| plotCodes | Man page Source code |
| plotCounts | Man page Source code |
| plotDR | Man page Source code |
| plotDiffHeatmap | Man page Source code |
| plotEvents | Man page Source code |
| plotExprHeatmap | Man page Source code |
| plotExprs | Man page Source code |
| plotFreqHeatmap | Man page Source code |
| plotMahal | Man page Source code |
| plotMedExprs | Man page Source code |
| plotMultiHeatmap | Man page Source code |
| plotNRS | Man page Source code |
| plotPbExprs | Man page Source code |
| plotScatter | Man page Source code |
| plotSpillmat | Man page Source code |
| plotYields | Man page Source code |
| prepData | Man page Source code |
| raw_data | Man page |
| runDR | Man page Source code |
| sample_ff | Man page |
| sample_ids | Man page |
| sample_ids,SingleCellExperiment-method | Man page |
| sample_key | Man page |
| sce2fcs | Man page Source code |
| ss_exp | Man page |
| state_markers | Man page |
| state_markers,SingleCellExperiment-method | Man page |
| type_markers | Man page |
| type_markers,SingleCellExperiment-method | Man page |
