data: Example data sets

Description Value Author(s) References Examples

Description

Value

see descriptions above.

Author(s)

Helena L Crowell helena.crowell@uzh.ch

References

Bodenmiller, B., Zunder, E.R., Finck, R., et al. (2012). Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators. Nature Biotechnology 30(9): 858-67.

Coursey, J.S., Schwab, D.J., Tsai, J.J., Dragoset, R.A. (2015). Atomic weights and isotopic compositions, (available at http://physics.nist.gov/Comp).

Examples

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### example data for concatenation & normalization:
    # raw measurement data
    data(raw_data)
  
### example data for debarcoding:
    # 20 barcoded samples
    data(sample_ff)
    # 6-choose-3 barcoding scheme
    data(sample_key)

### example data for compensation:
    # single-stained control samples
    data(ss_exp)
    # multiplexed cells
    data(mp_cells)
    
### example data for differential analysis:
    # REF vs. BCRXL samples
    data(PBMC_fs)
    # antigen panel & experimental design
    data(PBMC_panel, PBMC_md)
    # exemplary manual merging table
    data(merging_table)

CATALYST documentation built on Nov. 8, 2020, 6:53 p.m.