guessPanel: Guess parameter panel
In CATALYST: Cytometry dATa anALYSis Tools

Helper function to parse information from the parameters slot of a flowFrame/flowSet.

1	guessPanel(x, sep = "_")

`x`	a `flowFrame`.
`sep`	character string specifying how channel descriptions should be parsed. E.g., if `pData(x)$desc` contains both channel and antigens formatted as, `155Gd_CD73`, descriptions will be split according to `sep` and everything after the first `sep` will be used as the antigen name (here, CD73).

a data.frame with the following columns:

name: the parameter name as extracted from the input flowFrame,
desc: the parameter description as extracted from the input flowFrame,
antigen: the targeted protein markers, and
use_channel: logical. If TRUE, the channel is expected to contain a marker and will be kept.

Mark D Robinson & Helena L Crowell helena.crowell@uzh.ch

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# examplary data with Time, DNA, BC channels, etc.
data(raw_data)
guessPanel(raw_data[[1]])

CATALYST documentation built on Nov. 8, 2020, 6:53 p.m.

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