API for CATALYST
Cytometry dATa anALYSis Tools

Global functions
PBMC_fs Man page
PBMC_md Man page
PBMC_panel Man page
adaptSpillmat Man page
adaptSpillmat,matrix,vector-method Man page
applyCutoffs Man page
applyCutoffs,dbFrame-method Man page
arrangeSmoothed Source code
assignPrelim Man page
assignPrelim,character,data.frame-method Man page
assignPrelim,character,vector-method Man page
assignPrelim,flowFrame,data.frame-method Man page
assignPrelim,flowFrame,vector-method Man page
bc_ids Man page Man page
bc_ids,dbFrame-method Man page
bc_key Man page
bc_key,dbFrame-method Man page
check_sm Source code
check_validity_cols Source code
check_validity_of_k Source code
check_validity_which Source code
cluster Man page
cluster,daFrame-method Man page
cluster_codes Man page Man page
cluster_codes,daFrame-method Man page
cluster_ids Man page Man page
cluster_ids,daFrame-method Man page
compCytof Man page
compCytof,ANY,data.frame-method Man page
compCytof,character,matrix-method Man page
compCytof,flowFrame,matrix-method Man page
compCytof,flowSet,ANY-method Man page
computeSpillmat Man page
computeSpillmat,dbFrame-method Man page
concatFCS Man page
concatFCS,character-method Man page
concatFCS,flowSet-method Man page
concatFCS,list-method Man page
concat_fs Source code
counts Man page Man page
counts,dbFrame-method Man page
daFrame Man page Source code
daFrame-class Man page
daFrame-methods Man page
data Man page
dbFrame Man page
dbFrame-class Man page
dbFrame-methods Man page Man page
deltas Man page Man page
deltas,dbFrame-method Man page
diff_hm Source code
estCutoffs Man page
estCutoffs,dbFrame-method Man page
exprs Man page
exprs,daFrame-method Man page
exprs,dbFrame-method Man page
extractClusters Man page
extractClusters,daFrame-method Man page
get_axes Source code
get_bc_labs Source code
get_bead_cols Source code
get_bead_inds Source code
get_deltas Source code
get_dt_type Source code
get_ids Source code
get_legend Source code
get_mets_from_chs Source code
get_ms_from_chs Source code
get_sij Source code
get_spill_cols Source code
guessPanel Man page
guessPanel,flowFrame-method Man page
guessPanel,flowSet-method Man page
is_ConsensusClusterPlus_list Source code
isotope_list Man page
launchGUI Man page Source code
make_symetric Source code
marker_classes Man page
marker_classes,daFrame-method Man page
mergeClusters Man page
mergeClusters,daFrame-method Man page
merging_table Man page
mhl_cutoff Man page Man page
mhl_cutoff,dbFrame-method Man page
mhl_cutoff<- Man page
mhl_cutoff<-,dbFrame,ANY-method Man page
mhl_cutoff<-,dbFrame,numeric-method Man page
mhl_dists Man page Man page
mhl_dists,dbFrame-method Man page
mp_cells Man page
n_cells Man page Man page
n_cells,daFrame-method Man page
normCytof Man page
normCytof,character-method Man page
normCytof,flowFrame-method Man page
normed_bcs Man page Man page
normed_bcs,dbFrame-method Man page
nrs Source code
outFCS Man page
outFCS,dbFrame,flowFrame-method Man page
outFrames Man page
outFrames,dbFrame-method Man page
outNormed Source code
outPlots Source code
plotAbundances Man page
plotAbundances,daFrame-method Man page
plotBeads Source code
plotBeadsVsBeads Source code
plotClusterHeatmap Man page
plotClusterHeatmap,daFrame-method Man page
plotCodes Man page
plotCodes,daFrame-method Man page
plotCounts Man page
plotCounts,daFrame-method Man page
plotDiffHeatmap Man page
plotDiffHeatmap,ANY,list-method Man page
plotDiffHeatmap,SummarizedExperiment,SummarizedExperiment-method Man page
plotDiffHeatmap,daFrame,SummarizedExperiment-method Man page
plotDiffHeatmap,matrix,SummarizedExperiment-method Man page
plotEvents Man page
plotEvents,dbFrame-method Man page
plotExprHeatmap Man page
plotExprHeatmap,daFrame-method Man page
plotExprs Man page
plotExprs,daFrame-method Man page
plotMDS Man page
plotMDS,daFrame-method Man page
plotMahal Man page
plotMahal,dbFrame-method Man page
plotMedExprs Man page
plotMedExprs,daFrame-method Man page
plotNRS Man page
plotNRS,daFrame-method Man page
plotSNE Man page
plotSNE,daFrame-method Man page
plotScatter Source code
plotSmoothed Source code
plotSpillmat Man page
plotSpillmat,ANY,data.frame-method Man page
plotSpillmat,character,ANY-method Man page
plotSpillmat,numeric,matrix-method Man page
plotYields Man page
plotYields,dbFrame-method Man page
plot_delta_area Source code
plot_events Source code
plot_yields Source code
raw_data Man page
row_anno Source code
sample_ff Man page
sample_ids Man page
sample_ids,daFrame-method Man page
sample_key Man page
scale_exprs Source code
scientific_10 Source code
sep_cutoffs Man page Man page
sep_cutoffs,dbFrame-method Man page
sep_cutoffs<- Man page
sep_cutoffs<-,dbFrame,ANY-method Man page
sep_cutoffs<-,dbFrame,numeric-method Man page
ss_exp Man page
state_markers Man page Man page
state_markers,daFrame-method Man page
tSNE Man page
tSNE,daFrame-method Man page
triangle Source code
type_markers Man page Man page
type_markers,daFrame-method Man page
update_bead_inds Source code
warn_new_intearctions Source code
yields Man page Man page
yields,dbFrame-method Man page
CATALYST documentation built on May 19, 2018, 6:01 p.m.