Man pages for CHRONOS
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
| CHRONOSrun | Default run of CHRONOS |
| convertMiRNANomenclature | Conform miRNA annotations to the ones currently used by... |
| convertNomenclature | Convert genes identifier nomenclature. |
| createPathwayGraphs | Convert KEGG Pathways to Gene-Gene Network Graphs. |
| downloadKEGGPathwayList | Retrieve all availiable pathways for an organism. |
| downloadMiRecords | Download miRNA-mRNA interactions for an organism. |
| downloadPathways | Download KEGG pathways in KGML format. |
| extractLinearSubpathways | Linear subpathway extraction from pathway graphs |
| extractNonLinearSubpathways | Non linear subpathway extraction from pathway graphs |
| getEdgeTypes | Map various types of gene-gene interactions in KGML files to... |
| importExpressions | Import gene and miRNA expressions from |
| pathwayMeasures | Pathway structural and functional aspects |
| scoreSubpathways | Evaluate subpathways using an interacting scorng scheme (IS)... |
| subpathwayKEGGmap | Create links to KEGG pathway map with highlighted... |
| subpathwayMiRNAs | Create a circulat plot of a subpathway and the miRNAs that... |
| visualizeResults | Visualize results in tabular form (txt, xlsx) |
