pathwayMeasures: Pathway structural and functional aspects
In CHRONOS: CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Description
Usage
Arguments
Details
Value
Examples
View source: R/pathwayMeasures.R
Description
Pathway structural and functional aspects
Usage
1
pathwayMeasures(graphs)
Arguments
graphs
Pathway graphs as returned from
createPathwayGraphs.
Details
Structural and functional aspects of a pathway are calculated in
respect to all organism pathways.
Value
Matrix with pathness, betweeness centrality and degree values
for each gene in the pathway graphs at it's columns.
Examples
1
2
3
4
5
# Load pathway graphs from toy data
load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))
# Calculate pathway structural and functional aspects
measures <- pathwayMeasures(graphs)
CHRONOS documentation built on Nov. 8, 2020, 8:30 p.m.
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Description Usage Arguments Details Value Examples
View source: R/pathwayMeasures.R
Description
Pathway structural and functional aspects
Usage
1 | pathwayMeasures(graphs)
|
Arguments
graphs |
Pathway graphs as returned from
|
Details
Structural and functional aspects of a pathway are calculated in respect to all organism pathways.
Value
Matrix with pathness, betweeness centrality and degree values for each gene in the pathway graphs at it's columns.
Examples
1 2 3 4 5 | # Load pathway graphs from toy data
load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))
# Calculate pathway structural and functional aspects
measures <- pathwayMeasures(graphs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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