Files in CHRONOS
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

DESCRIPTION
NAMESPACE
inst/NEWS
inst/CITATION
inst/unitTests/test_subExtractionLinear.R inst/unitTests/test_subVisualization.R inst/unitTests/test_CHRONOSrun.R inst/unitTests/test_subExtractionNonLinear.R inst/unitTests/test_pathwayToGraph.R inst/unitTests/test_subRefinement.R inst/doc/CHRONOS.pdf inst/doc/CHRONOS.R inst/doc/CHRONOS.Rmd
inst/java/CHRONOS.jar
inst/extdata/Downloads/mirbase/miRNAmaps_mmu.RData
inst/extdata/Downloads/mirbase/miRNAmaps_rno.RData
inst/extdata/Downloads/mirbase/miRNAmaps_cel.RData
inst/extdata/Downloads/mirbase/miRNAmaps_dme.RData
inst/extdata/Downloads/mirbase/miRNAmaps_oar.RData
inst/extdata/Downloads/mirbase/miRNAmaps_gga.RData
inst/extdata/Downloads/mirbase/miRNAmaps_dre.RData
inst/extdata/Downloads/mirbase/miRNAmaps_hsa.RData
inst/extdata/Downloads/mirbase/miRNAmaps_cfa.RData
inst/extdata/Downloads/KEGG/hsa/hsa04915.xml
inst/extdata/Downloads/KEGG/hsa/hsa05031.xml
inst/extdata/Downloads/KEGG/hsa/hsa04930.xml
inst/extdata/Downloads/KEGG/hsa/hsa04917.xml
inst/extdata/Examples/data.RData
inst/extdata/Examples/kgml/hsa04915.xml
inst/extdata/Examples/kgml/hsa05031.xml
inst/extdata/Examples/kgml/hsa04930.xml
inst/extdata/Examples/kgml/hsa04917.xml
inst/extdata/User/interestingGenes.txt
inst/extdata/User/TarBase.xlsx
inst/extdata/User/miRecords.xlsx
inst/extdata/User/mRNAexpressions.txt
inst/extdata/User/miRNAexpressions.txt
vignettes/CHRONOS.Rmd
vignettes/figures/results.png
R/zzz.R R/subExtractionLinear.R R/pathwayToGraph.R R/subExtractionNonLinear.R R/subStatistics.R R/subRefinement.R R/utilities.R R/CHRONOSrun.R R/subScores.R R/mRNAconversion.R R/miRNAdownload.R R/dataImport.R R/pathwayDownload.R R/miRNAconversion.R R/pathwayMeasures.R R/subVisualization.R R/pathwayAnalysis.R man/downloadMiRecords.Rd man/pathwayMeasures.Rd man/createPathwayGraphs.Rd man/scoreSubpathways.Rd man/subpathwayKEGGmap.Rd man/convertNomenclature.Rd man/extractLinearSubpathways.Rd man/CHRONOSrun.Rd man/subpathwayMiRNAs.Rd man/extractNonLinearSubpathways.Rd man/importExpressions.Rd man/convertMiRNANomenclature.Rd man/getEdgeTypes.Rd man/downloadPathways.Rd man/visualizeResults.Rd man/downloadKEGGPathwayList.Rd
java/LinearPaths.java
java/FileIO.java
java/Graph.java
build/vignette.rds
tests/runTests.R
CHRONOS documentation built on Aug. 7, 2018, 6 p.m.