subpathwayKEGGmap: Create links to KEGG pathway map with highlighted...
In CHRONOS: CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Description
Usage
Arguments
Value
Examples
View source: R/subVisualization.R
Description
Create links to KEGG pathway map with highlighted subpathways.
Usage
1
subpathwayKEGGmap(subpathways, type, openInBrowser)
Arguments
subpathways
Subpathways as returned by
extractLinearSubpathways
or extractNonLinearSubpathways
type
Subpathway type (Linear, Non-Linear)
openInBrowser
Open link in default browser.
Value
Vector of links of KEGG pathway maps.
Examples
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# Load extracted linear subpathways from toy data
load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))
# Opening selected subpathways in default browser
subs <- linSubs$subpaths[1:3, ]
subpathwayKEGGmap(subpathways=subs, type='Linear', openInBrowser=FALSE)
CHRONOS documentation built on Nov. 8, 2020, 8:30 p.m.
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Description Usage Arguments Value Examples
View source: R/subVisualization.R
Description
Create links to KEGG pathway map with highlighted subpathways.
Usage
1 | subpathwayKEGGmap(subpathways, type, openInBrowser)
|
Arguments
subpathways |
Subpathways as returned by
|
type |
Subpathway type (Linear, Non-Linear) |
openInBrowser |
Open link in default browser. |
Value
Vector of links of KEGG pathway maps.
Examples
1 2 3 4 5 6 7 | # Load extracted linear subpathways from toy data
load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))
# Opening selected subpathways in default browser
subs <- linSubs$subpaths[1:3, ]
subpathwayKEGGmap(subpathways=subs, type='Linear', openInBrowser=FALSE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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