Download KEGG pathways in KGML format.
KEGG organism identifier
Download pathways for specified organism:
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a database resource
for understanding high-level functions and utilities of the biological ,
system such as the cell, the organism and the ecosystem, from
molecular-level information, especially large-scale molecular datasets
generated by genome sequencing and other high-throughput experimental
Files are downloaded in CHRONOS/extdata/Downloads/KEGG/<org> folder.
Downloading is skipped for existing files.
Downloaded data is stored in CHRONOS/extdata/Downloads/KEGG/<org>
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# View all availiable hsa pathways ## Not run: pathways <- downloadKEGGPathwayList(org='hsa') # Download pathway KGML files pathways <- c('04915', '04917', '04930', '05031') ## Not run: pathways <- downloadPathways(org='hsa', pathways=pathways)
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