importExpressions: Import gene and miRNA expressions from

In CHRONOS: CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Description

Import gene and miRNA expressions from

Usage

importExpressions(data, type, sep, org, mRNAnomenclature)

Arguments

data	Expressions data filename or matrix.
type	Expressions data type. (or mRNA expressions, type=<nomenType>. Availiable gene expression nomenclature can be found in convertNomenclature. For miRNA expressions, type='miRNA'.
sep	File delimiter.
org	KEGG organism identifier
mRNAnomenclature	Nomenclature of user's mRNA expressions

Details

• Import gene expressions data from CHRONOS/extdata/Input/<userFile>.txt or a supplied matrix.

• Import miRNA expressions data from CHRONOS/extdata/Input/<userFile>.txt or a supplied matrix.

Value

.

Examples

# Example

load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))

importExpressions(data=mRNAexpr, type='mRNA', 
                mRNAnomenclature='entrezgene', sep='\t', org='hsa')
importExpressions(data=miRNAexpr, type='miRNA', sep='\t', org='hsa')

CHRONOS documentation built on Nov. 8, 2020, 8:30 p.m.