visualizeResults: Visualize results in tabular form (txt, xlsx)

In CHRONOS: CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Description

Visualize results in tabular form (txt, xlsx)

Usage

visualizeResults(summary, export, expand, colors, from, to)

Arguments

summary	Evaluation results as returned from scoreSubpathways
export	'.xlsx' exports a xlsx file and '.txt' a .txt file.
expand	TRUE if each subpathway member and miRNA belongs to a single cell, FALSE if all subpathway members belong to one cell and miRNAs to another cell.
colors	The color scheme used in subScores heatmap.
from	Primary annotation convertNomenclature. Defaults to EntrezGene ID.
to	Secondary annotation convertNomenclature

Value

A txt or a xlsx file in CHRONOS/extdata/Output/Scores/Linear/<org>
or CHRONOS/extdata/Output/Scores/Non-Linear/<org>

Examples

# Load scored subpathways from toy data
load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))

visualizeResults(linSubsScored, export='txt')

CHRONOS documentation built on Nov. 8, 2020, 8:30 p.m.