| ChIPQC |
Man page
Source code
|
| ChIPQC-package |
Man page
|
| ChIPQCexperiment |
Man page
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| ChIPQCexperiment-class |
Man page
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| ChIPQCreport |
Man page
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| ChIPQCreport,ChIPQCexperiment-method |
Man page
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| ChIPQCreport,ChIPQCsample-method |
Man page
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| ChIPQCreport,list-method |
Man page
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| ChIPQCreport-methods |
Man page
|
| ChIPQCsample |
Man page
Source code
|
| ChIPQCsample-class |
Man page
|
| FragmentLengthCrossCoverage |
Man page
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| FragmentLengthCrossCoverage,ChIPQCexperiment-method |
Man page
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| FragmentLengthCrossCoverage,ChIPQCsample-method |
Man page
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| FragmentLengthCrossCoverage,list-method |
Man page
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| FragmentLengthCrossCoverage-methods |
Man page
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| GetGRanges |
Source code
|
| Normalisedaveragepeaksignal |
Man page
|
| Normalisedaveragepeaksignal,ChIPQCexperiment-method |
Man page
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| Normalisedaveragepeaksignal,ChIPQCsample-method |
Man page
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| Normalisedaveragepeaksignal,list-method |
Man page
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| Normalisedaveragepeaksignal-methods |
Man page
|
| QCannotation |
Man page
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| QCannotation,ChIPQCexperiment-method |
Man page
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| QCannotation-methods |
Man page
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| QCcontrol |
Man page
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| QCcontrol,ChIPQCexperiment-method |
Man page
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| QCcontrol-methods |
Man page
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| QCdba |
Man page
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| QCdba,ChIPQCexperiment-method |
Man page
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| QCdba-methods |
Man page
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| QCmetadata |
Man page
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| QCmetadata,ChIPQCexperiment-method |
Man page
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| QCmetadata,list-method |
Man page
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| QCmetadata-methods |
Man page
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| QCmetrics |
Man page
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| QCmetrics,ChIPQCexperiment-method |
Man page
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| QCmetrics,ChIPQCsample-method |
Man page
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| QCmetrics,list-method |
Man page
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| QCmetrics-methods |
Man page
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| QCminimize |
Source code
|
| QCsample |
Man page
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| QCsample,ChIPQCexperiment-method |
Man page
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| QCsample-methods |
Man page
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| ReadLengthCrossCoverage |
Man page
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| ReadLengthCrossCoverage,ChIPQCexperiment-method |
Man page
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| ReadLengthCrossCoverage,ChIPQCsample-method |
Man page
|
| ReadLengthCrossCoverage,list-method |
Man page
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| ReadLengthCrossCoverage-methods |
Man page
|
| RelativeCrossCoverage |
Man page
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| RelativeCrossCoverage,ChIPQCexperiment-method |
Man page
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| RelativeCrossCoverage,ChIPQCsample-method |
Man page
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| RelativeCrossCoverage,list-method |
Man page
|
| RelativeCrossCoverage-methods |
Man page
|
| addMatchingSample |
Source code
|
| averagepeaksignal |
Man page
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| averagepeaksignal,ChIPQCexperiment-method |
Man page
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| averagepeaksignal,ChIPQCsample-method |
Man page
|
| averagepeaksignal,list-method |
Man page
|
| averagepeaksignal-methods |
Man page
|
| blacklist_hg19 |
Man page
|
| coveragehistogram |
Man page
|
| coveragehistogram,ChIPQCexperiment-method |
Man page
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| coveragehistogram,ChIPQCsample-method |
Man page
|
| coveragehistogram,list-method |
Man page
|
| coveragehistogram-methods |
Man page
|
| crosscoverage |
Man page
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| crosscoverage,ChIPQCexperiment-method |
Man page
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| crosscoverage,ChIPQCsample-method |
Man page
|
| crosscoverage,list-method |
Man page
|
| crosscoverage-methods |
Man page
|
| doChIPQCsample |
Source code
|
| do_plotCorHeatmap |
Source code
|
| do_plotPCA |
Source code
|
| duplicateRate |
Man page
|
| duplicateRate,ChIPQCexperiment-method |
Man page
|
| duplicateRate,ChIPQCsample-method |
Man page
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| duplicateRate,list-method |
Man page
|
| duplicateRate-methods |
Man page
|
| duplicates |
Man page
|
| duplicates,ChIPQCexperiment-method |
Man page
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| duplicates,ChIPQCsample-method |
Man page
|
| duplicates,list-method |
Man page
|
| duplicates-methods |
Man page
|
| exampleExp |
Man page
|
| example_QCexperiment |
Man page
|
| extend |
Source code
|
| findCovMaxPos |
Source code
|
| flagtagcounts |
Man page
|
| flagtagcounts,ChIPQCexperiment-method |
Man page
|
| flagtagcounts,ChIPQCsample-method |
Man page
|
| flagtagcounts,list-method |
Man page
|
| flagtagcounts-methods |
Man page
|
| fragmentlength |
Man page
|
| fragmentlength,ChIPQCexperiment-method |
Man page
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| fragmentlength,ChIPQCsample-method |
Man page
|
| fragmentlength,list-method |
Man page
|
| fragmentlength-methods |
Man page
|
| frip |
Man page
|
| frip,ChIPQCexperiment-method |
Man page
|
| frip,ChIPQCsample-method |
Man page
|
| frip,list-method |
Man page
|
| frip-methods |
Man page
|
| getAnnotation |
Source code
|
| getAtts |
Source code
|
| getMeta |
Source code
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| getMetaFor |
Source code
|
| list2matrix |
Source code
|
| listadd |
Source code
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| makeCCplot |
Source code
|
| makeCoveragePlot |
Source code
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| makeFriblPlot |
Source code
|
| makeFripPlot |
Source code
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| makeIntroduction |
Source code
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| makePeakProfilePlot |
Source code
|
| makeRapPlot |
Source code
|
| makeRegiPlot |
Source code
|
| makeSSDPlot |
Source code
|
| makeSummarySection |
Source code
|
| mapped |
Man page
|
| mapped,ChIPQCexperiment-method |
Man page
|
| mapped,ChIPQCsample-method |
Man page
|
| mapped,list-method |
Man page
|
| mapped-methods |
Man page
|
| mergeMetadata |
Source code
|
| peaks |
Man page
|
| peaks,ChIPQCexperiment-method |
Man page
|
| peaks,ChIPQCsample-method |
Man page
|
| peaks,list-method |
Man page
|
| peaks-methods |
Man page
|
| plotCC |
Man page
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| plotCC,ChIPQCexperiment-method |
Man page
|
| plotCC,ChIPQCsample-method |
Man page
|
| plotCC,list-method |
Man page
|
| plotCC-methods |
Man page
|
| plotCorHeatmap |
Man page
|
| plotCorHeatmap,ChIPQCexperiment-method |
Man page
|
| plotCorHeatmap-methods |
Man page
|
| plotCoverageHist |
Man page
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| plotCoverageHist,ChIPQCexperiment-method |
Man page
|
| plotCoverageHist,ChIPQCsample-method |
Man page
|
| plotCoverageHist,list-method |
Man page
|
| plotCoverageHist-methods |
Man page
|
| plotFribl |
Man page
|
| plotFribl,ChIPQCexperiment-method |
Man page
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| plotFribl,ChIPQCsample-method |
Man page
|
| plotFribl,list-method |
Man page
|
| plotFribl-methods |
Man page
|
| plotFrip |
Man page
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| plotFrip,ChIPQCexperiment-method |
Man page
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| plotFrip,ChIPQCsample-method |
Man page
|
| plotFrip,list-method |
Man page
|
| plotFrip-methods |
Man page
|
| plotPeakProfile |
Man page
|
| plotPeakProfile,ChIPQCexperiment-method |
Man page
|
| plotPeakProfile,ChIPQCsample-method |
Man page
|
| plotPeakProfile,list-method |
Man page
|
| plotPeakProfile-methods |
Man page
|
| plotPrincomp |
Man page
|
| plotPrincomp,ChIPQCexperiment-method |
Man page
|
| plotPrincomp-methods |
Man page
|
| plotRap |
Man page
|
| plotRap,ChIPQCexperiment-method |
Man page
|
| plotRap,ChIPQCsample-method |
Man page
|
| plotRap,list-method |
Man page
|
| plotRap-methods |
Man page
|
| plotRegi |
Man page
|
| plotRegi,ChIPQCexperiment-method |
Man page
|
| plotRegi,ChIPQCsample-method |
Man page
|
| plotRegi,list-method |
Man page
|
| plotRegi-methods |
Man page
|
| plotSSD |
Man page
|
| plotSSD,ChIPQCexperiment-method |
Man page
|
| plotSSD,ChIPQCsample-method |
Man page
|
| plotSSD,list-method |
Man page
|
| plotSSD-methods |
Man page
|
| readlength |
Man page
|
| readlength,ChIPQCexperiment-method |
Man page
|
| readlength,ChIPQCsample-method |
Man page
|
| readlength,list-method |
Man page
|
| readlength-methods |
Man page
|
| reads |
Man page
|
| reads,ChIPQCexperiment-method |
Man page
|
| reads,ChIPQCsample-method |
Man page
|
| reads,list-method |
Man page
|
| reads-methods |
Man page
|
| regi |
Man page
|
| regi,ChIPQCexperiment-method |
Man page
|
| regi,ChIPQCsample-method |
Man page
|
| regi,list-method |
Man page
|
| regi-methods |
Man page
|
| ribl |
Man page
|
| ribl,ChIPQCexperiment-method |
Man page
|
| ribl,ChIPQCsample-method |
Man page
|
| ribl,list-method |
Man page
|
| ribl-methods |
Man page
|
| rip |
Man page
|
| rip,ChIPQCexperiment-method |
Man page
|
| rip,ChIPQCsample-method |
Man page
|
| rip,list-method |
Man page
|
| rip-methods |
Man page
|
| sampleQC |
Source code
|
| show,ChIPQCexperiment-method |
Man page
|
| show,ChIPQCsample-method |
Man page
|
| ssd |
Man page
|
| ssd,ChIPQCexperiment-method |
Man page
|
| ssd,ChIPQCsample-method |
Man page
|
| ssd,list-method |
Man page
|
| ssd-methods |
Man page
|
| table_RleList |
Source code
|
| tamoxifen |
Man page
|
| tamoxifen_QC |
Man page
|
