peaks-methods: Retrieve peaks

In ChIPQC: Quality metrics for ChIPseq data

Description

Retrieve peaks.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a GRangesList of the peaks associated with all the samples in an experiment.

signature(object = "list")

Retrieve a GRangesList of the peaks associated with all the samples in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample")

Retrieve a GRanges object containing the peaks associated with a sample.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
expPeaks = peaks(exampleExp)
length(expPeaks)
peaks(QCsample(exampleExp,1))

ChIPQC documentation built on Nov. 8, 2020, 8:06 p.m.