fragmentlength-methods: Retrieve the estimated fragment length

In ChIPQC: Quality metrics for ChIPseq data

Description

Retrieve the estimated fragment length.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of estimated fragments sizes, one for each sample in the experiment.

signature(object = "list")

Retrieve a vector of estimated fragments sizes, one for each sample in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample", width)

Retrieve the estimated fragment length for a sample. If width is missing, the readlength derived from the bam file is used as the read length.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
fragmentlength(exampleExp)
fragmentlength(QCsample(exampleExp,1))

ChIPQC documentation built on Nov. 8, 2020, 8:06 p.m.