plotCC-methods: Generate Cross-Coverage plots

In ChIPQC: Quality metrics for ChIPseq data

Description

Generate Cross-Coverage plots.

Methods

signature(object = "ChIPQCexperiment", method)

Generate cross-coverage plots for all the samples in an experiment.

signature(object = "list", method)

Generate cross-coverage plots for list of samples in an experiment.

signature(object = "ChIPQCsample", methods)

Generate cross-coverage plots for a sample. Supported methods include:

"Coverage" [default]	Coverage plot

Note

plotCC uses ggplot2 for plotting, and returns a ggplot2 plot dataframe.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
plotCC(exampleExp)
plotCC(exampleExp,excludedBox=TRUE)
plotCC(QCsample(exampleExp,1))
plotCC(QCsample(exampleExp)[1:4])

ChIPQC documentation built on Nov. 8, 2020, 8:06 p.m.