QCannotation-methods: Retrieve an annotation description, or a processed annotation

In ChIPQC: Quality metrics for ChIPseq data

Description

Retrieve an annotation description, or a processed annotation, from a ChIPQCexperiment object.

Methods

signature(object = "ChIPQCexperiment", bRetrieve=FALSE)

Retrieve the annotation. If bRetrieve=FALSE (default), the character string describing the annotation is returned (currently only “hg19” is supported). If bRetrieve=TRUE, a processed annotation is returned (in the form of a list). This can be used in subsequent calls to ChIPQC and/or ChIPQCsample for efficiency purposes.

Author(s)

Rory Stark and Thomas Carroll

See Also

ChIPQC-package, ChIPQCsample, ChIPQCexperiment

Examples

data(example_QCexperiment)
QCannotation(exampleExp)

ChIPQC documentation built on Nov. 8, 2020, 8:06 p.m.