ribl-methods: Retrieve numbers of reads overlapping blacklisted regions

In ChIPQC: Quality metrics for ChIPseq data

Description

Retrieve the numbers of reads overlapping blacklisted regions.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of the numbers of reads overlapping blacklisted regions for each sample in an experiment.

signature(object = "list")

Retrieve a vector of the numbers of reads overlapping blacklisted regions for each sample in a list of ChIPQCsample objects.

signature(object = "ChIPQCsample")

Retrieve the number of reads overlapping blacklisted regions in a sample.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
ribl(exampleExp)
ribl(QCsample(exampleExp,1))

ChIPQC documentation built on Nov. 8, 2020, 8:06 p.m.