ReadLengthCrossCoverage-methods: Retrieve the cross coverage values without extending reads

In ChIPQC: Quality metrics for ChIPseq data

Description

Retrieve the cross coverage values without extending reads.

Methods

signature(object = "ChIPQCexperiment")

Retrieve a vector of cross-coverage values for all samples in a ChIP-seq experiment, with no shift.

signature(object = "list")

Retrieve a vector of cross-coverage values for all samples in a list of ChIPQCsample objects, with no shift.

signature(object = "ChIPQCsample")

Retrieve the cross-coverage value for a sample, with no shift.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
ReadLengthCrossCoverage(exampleExp)
ReadLengthCrossCoverage(QCsample(exampleExp,1))

ChIPQC documentation built on Nov. 8, 2020, 8:06 p.m.