plotRap-methods: Generate reads in peaks plot

In ChIPQC: Quality metrics for ChIPseq data

Description

Generate reads in peaks plot.

Methods

signature(object = "ChIPQCexperiment", type="barstacked",facet=T, facetBy=c("Tissue","Factor"))

Generate reads in peaks plots for all the samples in an experiment.

signature(object = "list", type="barstacked",facet=T, facetBy=c("Sample"))

Generate reads in peaks plots for all the samples in a list of ChIPQCsample objects.

signature(object = "ChIPQCexperiment", type="barstacked",facet=T, facetBy=c("Tissue","Factor"))

Generate reads in peaks plots for all the samples in an experiment.

signature(object = "ChIPQCsample",type="barstacked",facet=T, facetBy=c("Tissue","Factor"))

Generate reads in peaks plots for a sample.

Note

plotRap uses ggplot2 for plotting, and returns a ggplot2 plot dataframe.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
plotRap(exampleExp,facetBy=c("Tissue","Factor"))
plotRap(QCsample(exampleExp,1))

ChIPQC documentation built on Nov. 8, 2020, 8:06 p.m.