plotPeakProfile-methods: Generate peak profile plots

In ChIPQC: Quality metrics for ChIPseq data

Description

Generate peak profile plots.

Methods

signature(object = "ChIPQCexperiment", method)

Generate peak profile plots for all the samples in an experiment.

signature(object = "list", method)

Generate peak profile plots for all the samples in a list of ChIPQCsample objects..

signature(object = "ChIPQCsample", method)

Generate peak profile plots for a sample.

Note

plotPeakProfile uses ggplot2 for plotting, and returns a ggplot2 plot dataframe.

Author(s)

Thomas Carroll and Rory Stark

See Also

ChIPQC-package, ChIPQCexperiment, ChIPQCsample

Examples

data(example_QCexperiment)
plotCoverageHist(exampleExp,facetBy=c("Tissue","Factor"))
plotCoverageHist(QCsample(exampleExp,1))
data(tamoxifen_QC)
plotCoverageHist(tamoxifen,facetBy=c("Tissue","Condition"))

ChIPQC documentation built on Nov. 8, 2020, 8:06 p.m.