Files in ChIPQC

Quality metrics for ChIPseq data

R/ChIPQCsample-class.R R/ChIPQC_IF.R R/ChIPQCexperiment-class.R R/utilities.R R/report.r R/dbaplots.R R/plots.r R/sampleQC.R man/ChIPQCreport.Rd man/ChIPQCexperiment-class.Rd man/plotPeakProfile-methods.Rd man/flagtagcounts-methods.Rd man/ChIPQC.Rd man/ChIPQC-data.Rd man/plotRap-methods.Rd man/RelativeCrossCoverage-methods.Rd man/Normalisedaveragepeaksignal-methods.Rd man/ssd-methods.Rd man/crosscoverage-methods.Rd man/plotFribl-methods.Rd man/plotCC-methods.Rd man/reads-methods.Rd man/plotCoverageHist-methods.Rd man/ChIPQC-package.Rd man/averagepeaksignal-methods.Rd man/readlength-methods.Rd man/fragmentlength-methods.Rd man/peaks-methods.Rd man/ReadLengthCrossCoverage-methods.Rd man/mapped-methods.Rd man/plotPrincomp-methods.Rd man/QCcontrol-methods.Rd man/QCmetrics-methods.Rd man/QCsample-methods.Rd man/plotCorHeatmap-methods.Rd man/plotRegi-methods.Rd man/ChIPQCsample-class.Rd man/FragmentLengthCrossCoverage-methods.Rd man/QCmetadata-methods.Rd man/frip-methods.Rd man/coveragehistogram-methods.Rd man/plotSSD-methods.Rd man/rip-methods.Rd man/duplicates-methods.Rd man/QCdba-methods.Rd man/ribl-methods.Rd man/regi-methods.Rd man/duplicateRate-methods.Rd man/QCannotation-methods.Rd man/plotFrip-methods.Rd inst/doc/ChIPQCSampleReport.pdf inst/doc/ChIPQC.R inst/doc/ChIPQC.pdf