num_cell_after_cor_filt_scExp: Number of cells before & after correlation filtering
In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
Description
Usage
Arguments
Value
Examples
View source: R/correlation_filtering_clustering.R
Description
Number of cells before & after correlation filtering
Usage
1
num_cell_after_cor_filt_scExp(scExp, scExp_cf)
Arguments
scExp
SingleCellExperiment object before correlation filtering.
scExp_cf
SingleCellExperiment object atfer correlation filtering.
Value
A colored kable with the number of cells per sample before and after
filtering for display
Examples
1
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3
4
5
data("scExp")
scExp_cf = correlation_and_hierarchical_clust_scExp(scExp)
scExp_cf = filter_correlated_cell_scExp(scExp_cf,
corr_threshold = 99, percent_correlation = 1)
## Not run: num_cell_after_cor_filt_scExp(scExp,scExp_cf)
ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value Examples
View source: R/correlation_filtering_clustering.R
Description
Number of cells before & after correlation filtering
Usage
1 | num_cell_after_cor_filt_scExp(scExp, scExp_cf)
|
Arguments
scExp |
SingleCellExperiment object before correlation filtering. |
scExp_cf |
SingleCellExperiment object atfer correlation filtering. |
Value
A colored kable with the number of cells per sample before and after filtering for display
Examples
1 2 3 4 5 | data("scExp")
scExp_cf = correlation_and_hierarchical_clust_scExp(scExp)
scExp_cf = filter_correlated_cell_scExp(scExp_cf,
corr_threshold = 99, percent_correlation = 1)
## Not run: num_cell_after_cor_filt_scExp(scExp,scExp_cf)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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