plot_heatmap_scExp: Plot cell correlation heatmap with annotations

In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Description

Plot cell correlation heatmap with annotations

Usage

plot_heatmap_scExp(
  scExp,
  name_hc = "hc_cor",
  corColors = (grDevices::colorRampPalette(c("royalblue", "white", "indianred1")))(256),
  color_by = NULL
)

Arguments

scExp	A SingleCellExperiment Object
name_hc	Name of the hclust contained in the SingleCellExperiment object
corColors	A palette of colors for the heatmap
color_by	Which features to add as additional bands on top of plot

Value

A heatmap of cell to cell correlation, grouping cells by hierarchical clustering.

Examples

data("scExp")
plot_heatmap_scExp(scExp)

ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.