Nothing
## ---- echo = FALSE,hide=TRUE, message=FALSE, warning=FALSE--------------------
library(ELMER)
library(DT)
library(dplyr)
library(BiocStyle)
## ----results='hide', eval=TRUE, fig.height=6,fig.cap="The plot shows the Odds Ratio (x axis) for the selected motifs with OR above 1.3 and lower boundary of OR above 1.3. The range shows the 95% confidence interval for each Odds Ratio."----
motif.enrichment.plot(motif.enrichment = "result/getMotif.hypo.motif.enrichment.csv",
significant = list(OR = 1.5,lowerOR = 1.3),
label = "hypo",
save = FALSE)
## ----results='hide', eval=TRUE, fig.height=10,fig.cap="The plot shows the Odds Ratio (x axis) for the selected motifs with OR above 1.3 and lower boundary of OR above 1.3. The range shows the 95% confidence interval for each Odds Ratio."----
motif.enrichment.plot(motif.enrichment = "result/getMotif.hypo.motif.enrichment.csv",
significant = list(OR = 1.5,lowerOR = 1.3),
label = "hypo",
summary = TRUE,
save = FALSE)
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