plotStat: Plot (very) basic statistics on the pangenome

In FindMyFriends: Microbial Comparative Genomics in R

Description

This method plots the number of genes in each organism and, if gene groups have been defined, the number of singleton, accessory and core gene groups.

Usage

plotStat(object, ...)

## S4 method for signature 'pgVirtual'
plotStat(object, sort = TRUE, color, ...)

Arguments

object	A pgVirtual subclass
...	Parameters passed on to color scale.
sort	logical. Should Genomes be sorted based on their number of genes
color	A metadata name to color the organisms by

Value

This function is called for its side effects

Methods (by class)

• pgVirtual: Plot basic statistics for pgVirtual subclasses

Examples

testPG <- .loadPgExample(withGroups=TRUE)

# Should make a nice little plot
plotStat(testPG)

FindMyFriends documentation built on Nov. 8, 2020, 6:46 p.m.