BaseTrack-class: Class "BaseTrack" represents base specific data

Description Objects from the Class Slots Extends Methods Author(s) References See Also Examples

Description

Represents specific data, e.g. how many times was every base sequenced

Objects from the Class

Objects can be created by calls of the form new("BaseTrack", ...).

Slots

base:

Object of class "numeric". Is a vector of base positions

value:

Object of class "numeric". Is a vector of corresponding values for every base

strand:

Object of class "character" represents that DNA strand

dp:

Object of class DisplayPars to control various features of how the track is displayed.

Extends

Class "gdObject", directly.

Methods

show

signature(object = "BaseTrack"): ...

Author(s)

Steffen Durinck

References

http://www.stat.berkeley.edu/~steffen/

See Also

objects to See Also as gdPlot

Examples

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if (interactive()) {
data("exampleData", package="GenomeGraphs")
ga <- new("GenomeAxis")
bt <- new("BaseTrack", base = yeastCons1[,1], value = yeastCons1[,2],
          dp = DisplayPars(color = "darkblue"))
gdPlot(list(ga, bt))
}

GenomeGraphs documentation built on May 20, 2017, 10:02 p.m.

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