Class "BaseTrack" represents base specific data

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Description

Represents specific data, e.g. how many times was every base sequenced

Objects from the Class

Objects can be created by calls of the form new("BaseTrack", ...).

Slots

base:

Object of class "numeric". Is a vector of base positions

value:

Object of class "numeric". Is a vector of corresponding values for every base

strand:

Object of class "character" represents that DNA strand

dp:

Object of class DisplayPars to control various features of how the track is displayed.

Extends

Class "gdObject", directly.

Methods

show

signature(object = "BaseTrack"): ...

Author(s)

Steffen Durinck

References

http://www.stat.berkeley.edu/~steffen/

See Also

objects to See Also as gdPlot

Examples

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if (interactive()) {
data("exampleData", package="GenomeGraphs")
ga <- new("GenomeAxis")
bt <- new("BaseTrack", base = yeastCons1[,1], value = yeastCons1[,2],
          dp = DisplayPars(color = "darkblue"))
gdPlot(list(ga, bt))
}

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