BaseTrack-class: Class "BaseTrack" represents base specific data
In GenomeGraphs: Plotting genomic information from Ensembl

Description Objects from the Class Slots Extends Methods Author(s) References See Also Examples

Represents specific data, e.g. how many times was every base sequenced

Objects can be created by calls of the form new("BaseTrack", ...).

base:: Object of class "numeric". Is a vector of base positions
value:: Object of class "numeric". Is a vector of corresponding values for every base
strand:: Object of class "character" represents that DNA strand
dp:: Object of class DisplayPars to control various features of how the track is displayed.

Class "gdObject", directly.

show: signature(object = "BaseTrack"): ...

Steffen Durinck

http://www.stat.berkeley.edu/~steffen/

objects to See Also as gdPlot

if (interactive()) {
data("exampleData", package="GenomeGraphs")
ga <- new("GenomeAxis")
bt <- new("BaseTrack", base = yeastCons1[,1], value = yeastCons1[,2],
          dp = DisplayPars(color = "darkblue"))
gdPlot(list(ga, bt))
}