makeGeneModel: Creates an object of class GeneModel

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/GenomeGraphs-classes.R

Description

Creates an object of class GeneModel representing a custom annotation or gene model

Usage

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makeGeneModel(start, end, chromosome, dp = NULL)

Arguments

start

Vector of start positions for exons

end

Vector of end positions for exons

chromosome

chromosome name

dp

Display parametes represented as an object of class DisplayPars

Value

Object of class GeneModel

Author(s)

Steffen Durinck and Jim Bullard

References

~put references to the literature/web site here ~

See Also

DisplayPars

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (start, end, chromosome, dp = NULL) 
{
    if (is.null(dp)) 
        dp <- getClass("GeneModel")@prototype@dp
    new("GeneModel", exonStart = start, exonEnd = end, dp = dp)
  }

GenomeGraphs documentation built on May 31, 2017, 12:26 p.m.